| 1 | Security, Justice and Governance | Ministry | 001 | Office of the President | |
| 2 | Security, Justice and Governance | Ministry | 002 | State House | |
| 3 | Security, Justice and Governance | Ministry | 003 | Office of the Prime Minister | |
| 4 | Security, Justice and Governance | Ministry | 004 | Ministry of Defence | |
| 5 | Security, Justice and Governance | Ministry | 006 | Ministry of Foreign Affairs | |
| 6 | Security, Justice and Governance | Ministry | 007 | Ministry of Justice and Constitutional Affairs | |
| 7 | Security, Justice and Governance | Ministry | 008 | Ministry of Finance, Planning & Economic Dev. | |
| 8 | Security, Justice and Governance | Ministry | 009 | Ministry of Internal Affairs | |
| 9 | Rural Development | Ministry | 010 | Ministry of Agriculture, Animal & Fisheries | |
| 10 | Rural Development | Ministry | 012 | Ministry of Lands, Housing & Urban Development | |
| 11 | Human Development | Ministry | 013 | Ministry of Education and Sports | |
| 12 | Human Development | Ministry | 014 | Ministry of Health | |
| 13 | Economic Infrastructure and Competitiveness | Ministry | 015 | Ministry of Trade, Industry and Cooperatives | |
| 14 | Economic Infrastructure and Competitiveness | Ministry | 016 | Ministry of Works and Transport | |
| 15 | Economic Infrastructure and Competitiveness | Ministry | 017 | Ministry of Energy and Mineral Development | |
| 16 | Human Development | Ministry | 018 | Ministry of Gender, Labour and Social Development | |
| 17 | Human Development | Ministry | 019 | Ministry of Water and Environment | |
| 18 | Economic Infrastructure and Competitiveness | Ministry | 020 | Ministry of ICT and National Guidance | |
| 19 | Security, Justice and Governance | Ministry | 021 | East African Community | |
| 20 | Economic Infrastructure and Competitiveness | Ministry | 022 | Ministry of Tourism, Wildlife and Antiquities | |
| 21 | Security, Justice and Governance | Ministry | 101 | Judiciary | |
| 22 | Human Development | Ministry | 023 | Ministry of Science,Technology and Innovation | |
| 23 | Security, Justice and Governance | Department | 112 | Ethics and Integrity | |
| 24 | Security, Justice and Governance | Department | 120 | National Citizenship and Immigration Control | |
| 25 | Human Development | Department | 132 | Education Service Commission | |
| 26 | Security, Justice and Governance | Department | 133 | Office of the Director of Public Prosecutions | |
| 27 | Human Development | Department | 134 | Health Service Commission | |
| 28 | Security, Justice and Governance | Department | 144 | Uganda Police Force | |
| 29 | Security, Justice and Governance | Department | 145 | Uganda Prisons | |
| 30 | Security, Justice and Governance | Department | 146 | Public Service Commission | |
| 31 | Security, Justice and Governance | Department | 148 | Judicial Service Commission | |
| 32 | Security, Justice and Governance | Department | 159 | External Security Organisation | |
| 33 | Security, Justice and Governance | Department | 305 | Directorate of Government Analytical Laboratory | |
| 34 | Security, Justice and Governance | Agency | 102 | Electoral Commission | |
| 35 | Security, Justice and Governance | Agency | 103 | Inspectorate of Government (IG) | |
| 36 | Security, Justice and Governance | Agency | 104 | Parliamentary Commission | |
| 37 | Security, Justice and Governance | Agency | 105 | Law Reform Commission | |
| 38 | Security, Justice and Governance | Agency | 106 | Uganda Human Rights Commission | |
| 39 | Human Development | Agency | 107 | Uganda AIDS Commission | |
| 40 | Security, Justice and Governance | Agency | 108 | National Planning Authority | |
| 41 | Security, Justice and Governance | Agency | 109 | Law Development Centre | |
| 42 | Economic Infrastructure and Competitiveness | Agency | 110 | Uganda Industrial Research Institute | |
| 43 | Economic Infrastructure and Competitiveness | Agency | 113 | Uganda National Roads Authority | |
| 44 | Human Development | Agency | 114 | Uganda Cancer Institute | |
| 45 | Human Development | Agency | 115 | Uganda Heart Institute | |
| 46 | Human Development | Agency | 116 | National Medical Stores | |
| 47 | Economic Infrastructure and Competitiveness | Agency | 117 | Uganda Tourism Board | |
| 48 | Economic Infrastructure and Competitiveness | Agency | 118 | Road Fund | |
| 49 | Security, Justice and Governance | Agency | 119 | Uganda Registration Services Bureau | |
| 50 | Rural Development | Agency | 121 | Dairy Development Authority | |